PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400021917
Common NameLOC102601150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 401aa    MW: 43555.9 Da    PI: 6.6613
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400021917genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.51.4e-3528149289
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec..eaess 78 
                           +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++          s+ +a+++  e+e+ 
  PGSC0003DMP400021917  28 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptigsvSAAAATNTniEQEQA 116
                           79**************************************************************7777766644222222222222222 PP

                   TCP  79 sssasnsssg........................k 89 
                           +++++   ++                        +
  PGSC0003DMP400021917 117 QKQQE--DNNfafqqgnvslfdnvagpsskrameS 149
                           22222..1113344444555443333333333330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.8E-3228205IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGETSRLGIR NTVGEIVEVQ GGHIVRSTGR KDRHSKVCTA KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKPAIDELAE LPAWKPTIGS VSAAAATNTN IEQEQAQKQQ  120
EDNNFAFQQG NVSLFDNVAG PSSKRAMESN TASFLPPSLE SDAIADTIKS FFPMGSSTSG  180
NSSAMQFHSF QEPHMLSRTN SQNQDLSLSL QFQDPILLHH QNQQAQHHNQ TNHREQEQVQ  240
VQAPAHFTGN TPLGFDTSGW SMHQRLGSWS DSRDTGPGGS GGAVTGPGGY LFNSPPAPAL  300
LQQLFGQNQF FSQRGPLQSS NTSSVRAWMD PSTIAIASGD PSHHHQAVLP MYPSTIPGYG  360
FASEVGEFSG FRIPARIQGE EEEHDGISDK PSSASSDSRH *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM2108770.0HM210877.1 Solanum tuberosum lanceolate gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006348284.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-103TCP4_ARATH; Transcription factor TCP4
TrEMBLM1AX460.0M1AX46_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.36e-92TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]